Commit | Line | Data |
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fd8a39b0 SG |
1 | import toxi.geom.Vec3D; |
2 | import toxi.geom.Matrix4x4; | |
3 | ||
4 | class HelixPattern extends SCPattern { | |
5 | ||
6 | // Stores a line in point + vector form | |
7 | private class Line { | |
8 | private final PVector origin; | |
9 | private final PVector vector; | |
ee1f21c7 | 10 | |
fd8a39b0 SG |
11 | Line(PVector pt, PVector v) { |
12 | origin = pt; | |
13 | vector = v.get(); | |
14 | vector.normalize(); | |
15 | } | |
ee1f21c7 | 16 | |
fd8a39b0 SG |
17 | PVector getPoint() { |
18 | return origin; | |
19 | } | |
ee1f21c7 | 20 | |
fd8a39b0 SG |
21 | PVector getVector() { |
22 | return vector; | |
23 | } | |
ee1f21c7 SG |
24 | |
25 | PVector getPointAt(final float t) { | |
26 | return PVector.add(origin, PVector.mult(vector, t)); | |
fd8a39b0 | 27 | } |
ee1f21c7 SG |
28 | |
29 | boolean isColinear(final PVector pt) { | |
30 | PVector projected = projectPoint(pt); | |
fd8a39b0 SG |
31 | return projected.x==pt.x && projected.y==pt.y && projected.z==pt.z; |
32 | } | |
ee1f21c7 SG |
33 | |
34 | float getTValue(final PVector pt) { | |
fd8a39b0 SG |
35 | PVector subtraction = PVector.sub(pt, origin); |
36 | return subtraction.dot(vector); | |
ee1f21c7 SG |
37 | } |
38 | ||
39 | PVector projectPoint(final PVector pt) { | |
fd8a39b0 SG |
40 | return getPointAt(getTValue(pt)); |
41 | } | |
ee1f21c7 | 42 | |
44521cb7 SG |
43 | PVector rotatePoint(final PVector p, final float t) { |
44 | final PVector o = origin; | |
45 | final PVector v = vector; | |
46 | ||
d814f9ad SG |
47 | final float cost = cos(t); |
48 | final float sint = sin(t); | |
49 | ||
50 | float x = (o.x*(v.y*v.y + v.z*v.z) - v.x*(o.y*v.y + o.z*v.z - v.x*p.x - v.y*p.y - v.z*p.z))*(1 - cost) + p.x*cost + (-o.z*v.y + o.y*v.z - v.z*p.y + v.y*p.z)*sint; | |
51 | float y = (o.y*(v.x*v.x + v.z*v.z) - v.y*(o.x*v.x + o.z*v.z - v.x*p.x - v.y*p.y - v.z*p.z))*(1 - cost) + p.y*cost + (o.z*v.x - o.x*v.z + v.z*p.x - v.x*p.z)*sint; | |
52 | float z = (o.z*(v.x*v.x + v.y*v.y) - v.z*(o.x*v.x + o.y*v.y - v.x*p.x - v.y*p.y - v.z*p.z))*(1 - cost) + p.z*cost + (-o.y*v.x + o.x*v.y - v.y*p.x + v.x*p.y)*sint; | |
44521cb7 | 53 | return new PVector(x, y, z); |
fd8a39b0 SG |
54 | } |
55 | } | |
56 | ||
57 | private class Helix { | |
58 | private final Line axis; | |
ee1f21c7 SG |
59 | private final float period; // period of coil |
60 | private final float rotationPeriod; // animation period | |
61 | private final float radius; // radius of coil | |
62 | private final float girth; // girth of coil | |
fd8a39b0 SG |
63 | private final PVector referencePoint; |
64 | private float phase; | |
65 | private PVector phaseNormal; | |
66 | ||
67 | Helix(Line axis, float period, float radius, float girth, float phase, float rotationPeriod) { | |
68 | this.axis = axis; | |
69 | this.period = period; | |
70 | this.radius = radius; | |
71 | this.girth = girth; | |
72 | this.phase = phase; | |
73 | this.rotationPeriod = rotationPeriod; | |
74 | ||
75 | // Generate a normal that will rotate to | |
76 | // produce the helical shape. | |
77 | PVector pt = new PVector(0, 1, 0); | |
78 | if (this.axis.isColinear(pt)) { | |
79 | pt = new PVector(0, 0, 1); | |
80 | if (this.axis.isColinear(pt)) { | |
81 | pt = new PVector(0, 1, 1); | |
82 | } | |
83 | } | |
84 | ||
85 | this.referencePoint = pt; | |
fd8a39b0 | 86 | |
ee1f21c7 SG |
87 | // The normal is calculated by the cross product of the axis |
88 | // and a random point that is not colinear with it. | |
89 | phaseNormal = axis.getVector().cross(referencePoint); | |
fd8a39b0 SG |
90 | phaseNormal.normalize(); |
91 | phaseNormal.mult(radius); | |
92 | } | |
ee1f21c7 | 93 | |
ee1f21c7 SG |
94 | Line getAxis() { |
95 | return axis; | |
96 | } | |
34d49545 SG |
97 | |
98 | PVector getPhaseNormal() { | |
99 | return phaseNormal; | |
100 | } | |
101 | ||
102 | float getPhase() { | |
103 | return phase; | |
104 | } | |
ee1f21c7 | 105 | |
fd8a39b0 | 106 | void step(int deltaMs) { |
ee1f21c7 SG |
107 | // Rotate |
108 | if (rotationPeriod != 0) { | |
117f538a | 109 | this.phase = (phase + ((float)deltaMs / (float)rotationPeriod) * TWO_PI); |
ee1f21c7 | 110 | } |
fd8a39b0 | 111 | } |
ee1f21c7 | 112 | |
fd8a39b0 SG |
113 | PVector pointOnToroidalAxis(float t) { |
114 | PVector p = axis.getPointAt(t); | |
115 | PVector middle = PVector.add(p, phaseNormal); | |
117f538a | 116 | return axis.rotatePoint(middle, (t / period) * TWO_PI + phase); |
fd8a39b0 | 117 | } |
ee1f21c7 SG |
118 | |
119 | color colorOfPoint(final PVector p) { | |
2a7c5e4d SG |
120 | float t = axis.getTValue(p); |
121 | ||
122 | // For performance reasons, cut out points that are outside of | |
123 | // the tube where the toroidal coil lives. | |
124 | if (abs(PVector.dist(p, axis.getPointAt(t)) - radius) > girth*.5f) { | |
125 | return color(0,0,0); | |
126 | } | |
127 | ||
fd8a39b0 SG |
128 | // Find the appropriate point for the current rotation |
129 | // of the helix. | |
34d49545 SG |
130 | PVector toroidPoint = axisPoint; |
131 | toroidPoint.add(phaseNormal); | |
132 | toroidPoint = axis.rotatePoint(toroidPoint, (t / period) * TWO_PI + phase); | |
ee1f21c7 | 133 | |
fd8a39b0 SG |
134 | // The rotated point represents the middle of the girth of |
135 | // the helix. Figure out if the current point is inside that | |
136 | // region. | |
137 | float d = PVector.dist(p, toroidPoint); | |
ee1f21c7 | 138 | |
117f538a | 139 | // Soften edges by fading brightness. |
c27cb078 | 140 | float b = constrain(100*(1 - ((d-.5*girth)/(girth*.5))), 0, 100); |
117f538a | 141 | return color((lx.getBaseHuef() + (360*(phase / TWO_PI)))%360, 80, b); |
fd8a39b0 SG |
142 | } |
143 | } | |
144 | ||
145 | private final Helix h1; | |
146 | private final Helix h2; | |
ee1f21c7 | 147 | |
fd8a39b0 SG |
148 | private final BasicParameter helix1On = new BasicParameter("H1ON", 1); |
149 | private final BasicParameter helix2On = new BasicParameter("H2ON", 1); | |
f904d86b | 150 | private final BasicParameter basePairsOn = new BasicParameter("BPON", 1); |
f904d86b SG |
151 | |
152 | private static final float helixCoilPeriod = 100; | |
153 | private static final float helixCoilRadius = 45; | |
154 | private static final float helixCoilGirth = 20; | |
155 | private static final float helixCoilRotationPeriod = 10000; | |
156 | ||
7992264a SG |
157 | private static final float spokePeriod = 40; |
158 | private static final float spokeGirth = 10; | |
159 | private static final float spokePhase = 10; | |
160 | private static final float spokeRadius = 35; // helixCoilRadius - helixCoilGirth*.5f; | |
161 | ||
fd8a39b0 SG |
162 | public HelixPattern(GLucose glucose) { |
163 | super(glucose); | |
ee1f21c7 | 164 | |
fd8a39b0 SG |
165 | addParameter(helix1On); |
166 | addParameter(helix2On); | |
f904d86b | 167 | addParameter(basePairsOn); |
f904d86b SG |
168 | |
169 | PVector origin = new PVector(100, 50, 45); | |
170 | PVector axis = new PVector(1,0,0); | |
ee1f21c7 | 171 | |
fd8a39b0 | 172 | h1 = new Helix( |
f904d86b SG |
173 | new Line(origin, axis), |
174 | helixCoilPeriod, | |
175 | helixCoilRadius, | |
176 | helixCoilGirth, | |
177 | 0, | |
178 | helixCoilRotationPeriod); | |
fd8a39b0 | 179 | h2 = new Helix( |
f904d86b SG |
180 | new Line(origin, axis), |
181 | helixCoilPeriod, | |
182 | helixCoilRadius, | |
183 | helixCoilGirth, | |
fd8a39b0 | 184 | PI, |
f904d86b | 185 | helixCoilRotationPeriod); |
fd8a39b0 | 186 | } |
7992264a SG |
187 | |
188 | private color calculateSpokeColor(final color h1c, final color h2c, final PVector pt) { | |
189 | // Find the closest spoke's t-value and calculate its | |
190 | // axis. Until everything animates in the model reference | |
191 | // frame, this has to be calculated at every step because | |
192 | // the helices rotate. | |
34d49545 SG |
193 | Line axis = h1.getAxis(); |
194 | float t = axis.getTValue(pt) + spokePhase; | |
7992264a | 195 | float spokeAxisTValue = floor(((t + spokePeriod/2) / spokePeriod)) * spokePeriod; |
34d49545 SG |
196 | PVector h1point = axis.getPointAt(t); |
197 | h1point.add(h1.getPhaseNormal()); | |
198 | h1point = axis.rotatePoint(h1point, (t / helixCoilPeriod) * TWO_PI + h1.getPhase()); | |
5e66f02a SG |
199 | // TODO(shaheen) investigate why h1.getAxis().getPointAt(spokeAxisTValue) doesn't quite |
200 | // have the same value as finding the middle between h1point and h2point. | |
201 | PVector spokeCenter = h1.getAxis().getPointAt(spokeAxisTValue); | |
202 | PVector spokeVector = PVector.sub(h1point, spokeCenter); | |
7992264a SG |
203 | spokeVector.normalize(); |
204 | Line spokeLine = new Line(h1point, spokeVector); | |
7992264a SG |
205 | PVector pointOnSpoke = spokeLine.projectPoint(pt); |
206 | float b = ((PVector.dist(pt, pointOnSpoke) < spokeGirth) && (PVector.dist(pointOnSpoke, spokeCenter) < spokeRadius)) ? 100.f : 0.f; | |
207 | return color(100, 80.f, b); | |
208 | } | |
ee1f21c7 | 209 | |
fd8a39b0 SG |
210 | void run(int deltaMs) { |
211 | boolean h1on = helix1On.getValue() > 0.5; | |
212 | boolean h2on = helix2On.getValue() > 0.5; | |
f904d86b | 213 | boolean spokesOn = (float)basePairsOn.getValue() > 0.5; |
ee1f21c7 | 214 | |
fd8a39b0 SG |
215 | h1.step(deltaMs); |
216 | h2.step(deltaMs); | |
ee1f21c7 | 217 | |
fd8a39b0 | 218 | for (Point p : model.points) { |
f904d86b SG |
219 | PVector pt = new PVector(p.x,p.y,p.z); |
220 | color h1c = h1.colorOfPoint(pt); | |
221 | color h2c = h2.colorOfPoint(pt); | |
7992264a | 222 | color spokeColor = calculateSpokeColor(h1c, h2c, pt); |
f904d86b SG |
223 | |
224 | if (!h1on) { | |
225 | h1c = color(0,0,0); | |
226 | } | |
ee1f21c7 | 227 | |
f904d86b SG |
228 | if (!h2on) { |
229 | h2c = color(0,0,0); | |
fd8a39b0 | 230 | } |
ee1f21c7 | 231 | |
f904d86b SG |
232 | if (!spokesOn) { |
233 | spokeColor = color(0,0,0); | |
fd8a39b0 | 234 | } |
ee1f21c7 | 235 | |
fd8a39b0 SG |
236 | // The helices are positioned to not overlap. If that changes, |
237 | // a better blending formula is probably needed. | |
f904d86b | 238 | colors[p.index] = blendColor(blendColor(h1c, h2c, ADD), spokeColor, ADD); |
fd8a39b0 SG |
239 | } |
240 | } | |
241 | } | |
242 |